If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ), 'gf_id' => 'HOM05D000797', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000797' ), 'data_identifier' => 'HOM05D000797', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000797', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '741', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30950' => 'bna', 'A03p17430' => 'bna', 'A03p17440' => 'bna', 'A03p34910' => 'bna', 'A03p38560' => 'bna', 'A03p50920' => 'bna', 'A04p07150' => 'bna', 'A05p35480' => 'bna', 'A06p00430' => 'bna', 'A06p42430' => 'bna', 'A09p25070' => 'bna', 'A09p32080' => 'bna', 'Aa31LG10G7300' => 'aar', 'Aa31LG10G830' => 'aar', 'Aa31LG2G6500' => 'aar', 'Aa31LG5G17430' => 'aar', 'Aa31LG8G1120' => 'aar', 'Aa31LG9G14930' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2557' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2782' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4083' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4087' => 'aag', 'Actinidia02582' => 'ach', 'Actinidia14879' => 'ach', 'Actinidia14880' => 'ach', 'Actinidia16643' => 'ach', 'Actinidia18563' => 'ach', 'Actinidia19577' => 'ach', 'Actinidia21778' => 'ach', 'Actinidia32164' => 'ach', 'Actinidia40296' => 'ach', 'Ah.03g137760' => 'amhyb', 'Ah.04g153650' => 'amhyb', 'Ah.05g167870' => 'amhyb', 'Ah.05g175300' => 'amhyb', 'Ah.05g178010' => 'amhyb', 'AL1G48990' => 'aly', 'AL1G62950' => 'aly', 'AL3G17970' => 'aly', 'AL3G26110' => 'aly', 'AL5G14500' => 'aly', 'AL5G32790' => 'aly', 'Aqoxy116s002' => 'aox', 'Aqoxy1G00989' => 'aox', 'Aqoxy3G00322' => 'aox', 'Aqoxy5G00779' => 'aox', 'Aqoxy6G00126' => 'aox', 'Aqoxy7G01150' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3W4LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4X1WS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.632TA6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UA35R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WVU2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KBG8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZZQ7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4411R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6BPEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G31VK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G32VP9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9AJXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ882D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5V71U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PI69HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU6QXS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2K3RD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1BVEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLW17E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XA2D1U' => 'arhy', 'AT1G34430' => 'ath', 'AT1G54220' => 'ath', 'AT3G06850' => 'ath', 'AT3G13930' => 'ath', 'AT3G25860' => 'ath', 'AT3G52200' => 'ath', 'ATR0127G012' => 'atr', 'ATR0152G030' => 'atr', 'ATR0665G066' => 'atr', 'ATR0796G192' => 'atr', 'ATR0820G060' => 'atr', 'Atru.chr1.3800' => 'acertr', 'Atru.chr11.1284' => 'acertr', 'Atru.chr12.945' => 'acertr', 'Atru.chr13.1803' => 'acertr', 'Atru.chr13.1822' => 'acertr', 'Atru.chr4.2892' => 'acertr', 'AUR62002885' => 'cqu', 'AUR62004241' => 'cqu', 'AUR62004658' => 'cqu', 'AUR62013607' => 'cqu', 'AUR62018093' => 'cqu', 'AUR62023575' => 'cqu', 'AUR62032016' => 'cqu', 'AUR62035248' => 'cqu', 'AUR62037785' => 'cqu', 'AUR62042228' => 'cqu', 'BcaB02g08583' => 'bca', 'BcaB02g10854' => 'bca', 'BcaB04g17875' => 'bca', 'BcaB04g18813' => 'bca', 'BcaB06g25418' => 'bca', 'BcaB07g30629' => 'bca', 'BcaB07g33114' => 'bca', 'BcaB07g33241' => 'bca', 'BcaB07g33243' => 'bca', 'BcaC01g03965' => 'bca', 'BcaC02g09272' => 'bca', 'BcaC02g10301' => 'bca', 'BcaC03g15480' => 'bca', 'BcaC04g21414' => 'bca', 'BcaC05g29140' => 'bca', 'BcaC06g31110' => 'bca', 'BcaC06g33946' => 'bca', 'BcaC06g34973' => 'bca', 'BcaC07g37096' => 'bca', 'BcaC07g39589' => 'bca', 'BcaC08g43603' => 'bca', 'BcaC08g43774' => 'bca', 'BcaC09g47924' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00130' => 'bna', 'BolC1t05582H' => 'bol', 'BolC3t16519H' => 'bol', 'BolC3t16932H' => 'bol', 'BolC4t24587H' => 'bol', 'BolC4t25657H' => 'bol', 'BolC5t34047H' => 'bol', 'BolC6t36074H' => 'bol', 'BolC6t36283H' => 'bol', 'BolC6t36763H' => 'bol', 'BolC7t44020H' => 'bol', 'BolC8t50484H' => 'bol', 'BolC9t56058H' => 'bol', 'BraA01t04410Z' => 'bra', 'BraA03t11017Z' => 'bra', 'BraA03t12671Z' => 'bra', 'BraA03t13004Z' => 'bra', 'BraA04t16411Z' => 'bra', 'BraA05t22358Z' => 'bra', 'BraA06t23257Z' => 'bra', 'BraA06t27158Z' => 'bra', 'BraA09t38094Z' => 'bra', 'BraA09t38743Z' => 'bra', 'BraA09t39989Z' => 'bra', 'C03p42490' => 'bna', 'C03p46680' => 'bna', 'C04p40740' => 'bna', 'C05p53790' => 'bna', 'C06p10010' => 'bna', 'C06p11500' => 'bna', 'C06p15730' => 'bna', 'C07p34880' => 'bna', 'C08p04620' => 'bna', 'C08p27440' => 'bna', 'C09p32060' => 'bna', 'C09p32070' => 'bna', 'CAN.G1137.1' => 'can', 'CAN.G135.53' => 'can', 'CAN.G342.3' => 'can', 'CAN.G381.3' => 'can', 'CAN.G584.10' => 'can', 'CAN.G656.25' => 'can', 'CANSAT25G0114' => 'cansat', 'CANSAT56G1402' => 'cansat', 'CANSAT56G3160' => 'cansat', 'CANSAT64G0542' => 'cansat', 'CANSAT78G2398' => 'cansat', 'CARHR033860' => 'chi', 'CARHR044610' => 'chi', 'CARHR081460' => 'chi', 'CARHR088740' => 'chi', 'CARHR146820' => 'chi', 'CARHR161960' => 'chi', 'Carub.0001s3256' => 'cru', 'Carub.0001s4347' => 'cru', 'Carub.0003s0638' => 'cru', 'Carub.0003s1350' => 'cru', 'Carub.0005s0369' => 'cru', 'Carub.0005s1856' => 'cru', 'Ca_05819_v3' => 'car', 'Ca_05829_v3' => 'car', 'Ca_10480_v3' => 'car', 'Ca_10608_v3' => 'car', 'Ca_11182_v3' => 'car', 'Ca_21482_v3' => 'car', 'Ca_23350_v3' => 'car', 'CBR_g28697' => 'cbr', 'CBR_g41480' => 'cbr', 'CBR_g46' => 'cbr', 'CBR_g54237' => 'cbr', 'Cc00_g11310' => 'ccan', 'Cc00_g11890' => 'ccan', 'Cc02_g10360' => 'ccan', 'Cc03_g01610' => 'ccan', 'Cc04_g01660' => 'ccan', 'Cc11_g10270' => 'ccan', 'CDE01G0587' => 'cde', 'CDE02G3064' => 'cde', 'CDE04G3522' => 'cde', 'CDE05G1653' => 'cde', 'CDE05G2416' => 'cde', 'CDE05G3582' => 'cde', 'CDE11G0212' => 'cde', 'CDE12G0277' => 'cde', 'CDE12G0902' => 'cde', 'Cfa003559' => 'cfa', 'Cfa011204' => 'cfa', 'Cfa011206' => 'cfa', 'Cfa014702' => 'cfa', 'Cfa018197' => 'cfa', 'Cfa018608' => 'cfa', 'Cfa021619' => 'cfa', 'Cfa024475' => 'cfa', 'Cfa027357' => 'cfa', 'Ciclev10001084m.g' => 'ccl', 'Ciclev10004761m.g' => 'ccl', 'Ciclev10025308m.g' => 'ccl', 'Ciclev10030940m.g' => 'ccl', 'Ciclev10031397m.g' => 'ccl', 'Ciclev10033754m.g' => 'ccl', 'CiPaw.01G145900' => 'cil', 'CiPaw.01G222600' => 'cil', 'CiPaw.02G138200' => 'cil', 'CiPaw.13G035200' => 'cil', 'CiPaw.15G083700' => 'cil', 'CiPaw.16G062300' => 'cil', 'CiPaw.16G064100' => 'cil', 'ClCG05G006220' => 'cla', 'ClCG05G022820' => 'cla', 'ClCG07G013880' => 'cla', 'ClCG08G008000' => 'cla', 'ClCG09G010430' => 'cla', 'ClCG09G010440' => 'cla', 'COL.COLO4_07907' => 'col', 'COL.COLO4_08133' => 'col', 'COL.COLO4_30700' => 'col', 'COL.COLO4_30703' => 'col', 'Cpa.g.sc1.184' => 'cpa', 'Cpa.g.sc106.32' => 'cpa', 'Cpa.g.sc128.57' => 'cpa', 'Cpa.g.sc3.118' => 'cpa', 'Cpa.g.sc50.171' => 'cpa', 'Cpa.g.sc66.53' => 'cpa', 'Cre03.g158900' => 'cre', 'Cre04.g228350' => 'cre', 'Cre06.g252550' => 'cre', 'Cre06.g278227' => 'cre', 'Cre09.g386735' => 'cre', 'CsaV3_2G032870' => 'csa', 'CsaV3_3G014830' => 'csa', 'CsaV3_3G043710' => 'csa', 'CsaV3_5G034210' => 'csa', 'CsaV3_7G024120' => 'csa', 'CSS0010770' => 'camsi', 'CSS0015593' => 'camsi', 'CSS0015884' => 'camsi', 'CSS0018055' => 'camsi', 'CSS0023302' => 'camsi', 'CSS0025376' => 'camsi', 'CSS0044303' => 'camsi', 'CSS0045279' => 'camsi', 'DCAR_006377' => 'dca', 'DCAR_007637' => 'dca', 'DCAR_023667' => 'dca', 'DCAR_026406' => 'dca', 'Dinv01118' => 'din', 'Dinv08019' => 'din', 'Dinv21103' => 'din', 'Dinv31283' => 'din', 'Dinv37677' => 'din', 'Dinv41691' => 'din', 'Dinv44356' => 'din', 'Duzib106G0394' => 'dzi', 'Duzib106G1442' => 'dzi', 'Duzib116G0367' => 'dzi', 'Duzib128G0990' => 'dzi', 'Duzib160G0547' => 'dzi', 'Duzib177G0720' => 'dzi', 'Duzib192G0315' => 'dzi', 'Duzib212G0824' => 'dzi', 'Duzib235G0059' => 'dzi', 'Duzib248G1601' => 'dzi', 'Duzib251G0515' => 'dzi', 'ECA152G0005' => 'eca', 'ECA232G1949' => 'eca', 'ECA233G2767' => 'eca', 'ECA234G2323' => 'eca', 'ECA246G2476' => 'eca', 'EL10Ac1g00072' => 'bvu', 'EL10Ac1g00928' => 'bvu', 'EL10Ac2g02656' => 'bvu', 'EL10Ac3g06632' => 'bvu', 'EL10Ac6g14435' => 'bvu', 'Eucgr.F03161' => 'egr', 'Eucgr.F04134' => 'egr', 'Eucgr.G02332' => 'egr', 'Eucgr.H03953' => 'egr', 'Eucgr.J01028' => 'egr', 'Eucgr.L03768' => 'egr', 'FAN01G0483' => 'fan', 'FAN02G2754' => 'fan', 'FAN03G1164' => 'fan', 'FAN05G5421' => 'fan', 'FAN06G0640' => 'fan', 'FAN06G2988' => 'fan', 'FAN07G2182' => 'fan', 'FAN09G2886' => 'fan', 'FAN10G1566' => 'fan', 'FAN10G1800' => 'fan', 'FAN12G2994' => 'fan', 'FAN12G3777' => 'fan', 'FAN14G2786' => 'fan', 'FAN22G2427' => 'fan', 'FAN24G3023' => 'fan', 'FAN27G1539' => 'fan', 'FvH4_2g12130' => 'fve', 'FvH4_2g21082' => 'fve', 'FvH4_4g18561' => 'fve', 'FvH4_4g27580' => 'fve', 'FvH4_4g29931' => 'fve', 'FvH4_6g34140' => 'fve', 'FvH4_7g18300' => 'fve', 'Glyma.01G081900' => 'gma', 'Glyma.07G035000' => 'gma', 'Glyma.07G246000' => 'gma', 'Glyma.10G201000' => 'gma', 'Glyma.10G215400' => 'gma', 'Glyma.16G004400' => 'gma', 'Glyma.17G028000' => 'gma', 'Glyma.20G114500' => 'gma', 'Glyma.20G176300' => 'gma', 'Glyma.20G189500' => 'gma', 'Gohir.A05G136800' => 'ghi', 'Gohir.A05G250900' => 'ghi', 'Gohir.A06G192500' => 'ghi', 'Gohir.A09G237700' => 'ghi', 'Gohir.A10G199600' => 'ghi', 'Gohir.A13G054200' => 'ghi', 'Gohir.D05G138800' => 'ghi', 'Gohir.D05G252900' => 'ghi', 'Gohir.D06G200400' => 'ghi', 'Gohir.D09G238600' => 'ghi', 'Gohir.D10G207600' => 'ghi', 'Gohir.D13G067700' => 'ghi', 'Gorai.006G261300' => 'gra', 'Gorai.009G143100' => 'gra', 'Gorai.009G264100' => 'gra', 'Gorai.010G233900' => 'gra', 'Gorai.011G233300' => 'gra', 'Gorai.013G077100' => 'gra', 'GSVIVG01011909001' => 'vvi', 'GSVIVG01015168001' => 'vvi', 'GSVIVG01016812001' => 'vvi', 'GSVIVG01034492001' => 'vvi', 'GSVIVG01034677001' => 'vvi', 'GSVIVG01035121001' => 'vvi', 'HanXRQChr02g0058711' => 'han', 'HanXRQChr02g0059881' => 'han', 'HanXRQChr03g0074491' => 'han', 'HanXRQChr03g0089531' => 'han', 'HanXRQChr04g0107421' => 'han', 'HanXRQChr05g0147541' => 'han', 'HanXRQChr08g0214191' => 'han', 'HanXRQChr09g0273681' => 'han', 'HanXRQChr10g0312371' => 'han', 'HanXRQChr12g0364671' => 'han', 'HanXRQChr12g0372841' => 'han', 'HanXRQChr14g0438081' => 'han', 'HanXRQChr17g0536081' => 'han', 'Haze_02640' => 'cav', 'Haze_13326' => 'cav', 'Haze_15989' => 'cav', 'Haze_17466' => 'cav', 'Haze_17916' => 'cav', 'Haze_27053' => 'cav', 'Hma1.2p1_0061F.1_g034130' => 'hma', 'Hma1.2p1_0072F.1_g038250' => 'hma', 'Hma1.2p1_0291F.1_g115440' => 'hma', 'Hma1.2p1_0361F.1_g136000' => 'hma', 'Hma1.2p1_0406F.1_g146140' => 'hma', 'Hma1.2p1_0496F.1_g166010' => 'hma', 'Hma1.2p1_0496F.1_g166040' => 'hma', 'Hma1.2p1_0804F.1_g220990' => 'hma', 'Hma1.2p1_0804F.1_g221000' => 'hma', 'Hma1.2p1_0804F.1_g221010' => 'hma', 'HPP92_002152' => 'vpl', 'HPP92_002232' => 'vpl', 'HPP92_009638' => 'vpl', 'HPP92_011410' => 'vpl', 'HPP92_017899' => 'vpl', 'HPP92_017904' => 'vpl', 'HPP92_018670' => 'vpl', 'HPP92_018688' => 'vpl', 'Hund02257' => 'sun', 'Hund20525' => 'sun', 'Hund22305' => 'sun', 'Hund25081' => 'sun', 'Hund27080' => 'sun', 'Lalb_Chr02g0141851' => 'lal', 'Lalb_Chr02g0151271' => 'lal', 'Lalb_Chr04g0254761' => 'lal', 'Lalb_Chr04g0263301' => 'lal', 'Lalb_Chr10g0099951' => 'lal', 'Lalb_Chr12g0196651' => 'lal', 'Lalb_Chr21g0313141' => 'lal', 'Lalb_Chr25g0280931' => 'lal', 'Lj1A1031T78' => 'lonja', 'Lj2g0022754' => 'lja', 'Lj3A1017T53' => 'lonja', 'Lj3A934G29' => 'lonja', 'Lj3g0024966' => 'lja', 'Lj5g0003373' => 'lja', 'Lj5g0021294' => 'lja', 'Lj6A680T85' => 'lonja', 'Lj6A761T55' => 'lonja', 'Lj7A293T49' => 'lonja', 'Lj9A521G32' => 'lonja', 'Lsat_1_v5_gn_0_10961' => 'lsa', 'Lsat_1_v5_gn_1_10500' => 'lsa', 'Lsat_1_v5_gn_1_23661' => 'lsa', 'Lsat_1_v5_gn_3_117300' => 'lsa', 'Lsat_1_v5_gn_3_17620' => 'lsa', 'Lsat_1_v5_gn_3_24121' => 'lsa', 'Lsat_1_v5_gn_4_18420' => 'lsa', 'Lsat_1_v5_gn_5_135560' => 'lsa', 'Lsat_1_v5_gn_7_19781' => 'lsa', 'Lsat_1_v5_gn_8_104680' => 'lsa', 'Lsat_1_v5_gn_8_39180' => 'lsa', 'Manes.02G190800' => 'mes', 'Manes.03G198100' => 'mes', 'Manes.04G141800' => 'mes', 'Manes.10G054100' => 'mes', 'Manes.11G023600' => 'mes', 'Manes.14G100900' => 'mes', 'Manes.18G100100' => 'mes', 'Mapoly0001s0327' => 'mpo', 'Mapoly0014s0063' => 'mpo', 'Mapoly0041s0151' => 'mpo', 'Mapoly0127s0040' => 'mpo', 'MBI01_g41123_MAGBIO' => 'mbi', 'MBI04_g25407_MAGBIO' => 'mbi', 'MBI07_g17485_MAGBIO' => 'mbi', 'MBI07_g31504_MAGBIO' => 'mbi', 'MBI09_g41594_MAGBIO' => 'mbi', 'MBI14_g16704_MAGBIO' => 'mbi', 'MBI15_g36153_MAGBIO' => 'mbi', 'MBI16_g32809_MAGBIO' => 'mbi', 'MBI17_g15290_MAGBIO' => 'mbi', 'MBI17_g44110_MAGBIO' => 'mbi', 'MBI18_g35143_MAGBIO' => 'mbi', 'MBI19_g30024_MAGBIO' => 'mbi', 'MBI19_g34790_MAGBIO' => 'mbi', 'MCO04G231' => 'mco', 'MCO04G329' => 'mco', 'MCO07G401' => 'mco', 'MCO13G035' => 'mco', 'MD01G1099700' => 'mdo', 'MD02G1146100' => 'mdo', 'MD05G1040900' => 'mdo', 'MD07G1166600' => 'mdo', 'MD09G1188500' => 'mdo', 'MD10G1046900' => 'mdo', 'MD10G1047200' => 'mdo', 'MD13G1043400' => 'mdo', 'MD13G1165700' => 'mdo', 'MD13G1165800' => 'mdo', 'MD16G1044200' => 'mdo', 'MD17G1172600' => 'mdo', 'Medtr1g091037' => 'mtr', 'Medtr1g096240' => 'mtr', 'Medtr1g096250' => 'mtr', 'Medtr1g111140' => 'mtr', 'Medtr4g120220' => 'mtr', 'Medtr5g055667' => 'mtr', 'Medtr8g018770' => 'mtr', 'MELO3C006679.2' => 'cme', 'MELO3C012235.2' => 'cme', 'MELO3C013081.2' => 'cme', 'MELO3C019872.2' => 'cme', 'MELO3C023666.2' => 'cme', 'Migut.C01244' => 'egut', 'Migut.D00952' => 'egut', 'Migut.E00327' => 'egut', 'Migut.F00923' => 'egut', 'Migut.G00134' => 'egut', 'Migut.I01049' => 'egut', 'Migut.L01074' => 'egut', 'Migut.L01393' => 'egut', 'MSTRG.10111' => 'ama', 'MSTRG.1518' => 'ama', 'MSTRG.22564' => 'ama', 'MSTRG.27515' => 'ama', 'MSTRG.7675' => 'ama', 'MSTRG.829' => 'ama', 'Nitab4.5_0000145g0160' => 'nta', 'Nitab4.5_0000244g0270' => 'nta', 'Nitab4.5_0000560g0010' => 'nta', 'Nitab4.5_0000593g0070' => 'nta', 'Nitab4.5_0000695g0030' => 'nta', 'Nitab4.5_0000937g0020' => 'nta', 'Nitab4.5_0002214g0090' => 'nta', 'Nitab4.5_0003407g0070' => 'nta', 'Nitab4.5_0003408g0130' => 'nta', 'Nitab4.5_0005003g0050' => 'nta', 'Nitab4.5_0005312g0020' => 'nta', 'Nitab4.5_0006099g0010' => 'nta', 'Nitab4.5_0008919g0020' => 'nta', 'Nitab4.5_0009641g0070' => 'nta', 'Nn2g15737' => 'nnu', 'Nn3g17807' => 'nnu', 'Nn3g21531' => 'nnu', 'Nn4g26470' => 'nnu', 'Nn5g27754' => 'nnu', 'Nn6g35097' => 'nnu', 'Nn6g35540' => 'nnu', 'Nn7g36308' => 'nnu', 'Nn8g38777' => 'nnu', 'Oeu000554.1' => 'oeu', 'Oeu004350.1' => 'oeu', 'Oeu017877.2' => 'oeu', 'Oeu021011.2' => 'oeu', 'Oeu027299.1' => 'oeu', 'Oeu039599.3' => 'oeu', 'Oeu057617.1' => 'oeu', 'Os01g0314100' => 'osa', 'Os02g0105200' => 'osa', 'Os06g0105400' => 'osa', 'Os06g0499900' => 'osa', 'Os07g0410100' => 'osa', 'Os08g0431300' => 'osa', 'Os09g0408600' => 'osa', 'Os12g0182200' => 'osa', 'Peaxi162Scf00004g01917' => 'pax', 'Peaxi162Scf00038g01734' => 'pax', 'Peaxi162Scf00065g01524' => 'pax', 'Peaxi162Scf00310g00822' => 'pax', 'Peaxi162Scf00382g00217' => 'pax', 'Peaxi162Scf00398g00717' => 'pax', 'PGR004G0333' => 'pgr', 'PGR031G0906' => 'pgr', 'PGR044G1783' => 'pgr', 'PGR102G0070' => 'pgr', 'PGR119G1596' => 'pgr', 'PGSC0003DMG400009219' => 'stu', 'PGSC0003DMG400011330' => 'stu', 'PGSC0003DMG400012966' => 'stu', 'PGSC0003DMG400018735' => 'stu', 'Phvul.003G035101' => 'pvu', 'Phvul.003G106700' => 'pvu', 'Phvul.007G026300' => 'pvu', 'Phvul.007G090300' => 'pvu', 'Phvul.007G106200' => 'pvu', 'Phvul.010G134600' => 'pvu', 'Potri.001G198000' => 'ptr', 'Potri.003G043900' => 'ptr', 'Potri.008G027400' => 'ptr', 'Potri.008G119500' => 'ptr', 'Potri.008G219700' => 'ptr', 'Potri.010G011300' => 'ptr', 'Potri.010G126600' => 'ptr', 'Potri.013G114300' => 'ptr', 'Potri.019G084900' => 'ptr', 'Pp3c13_20240' => 'ppa', 'Pp3c15_17630' => 'ppa', 'Pp3c15_5260' => 'ppa', 'Pp3c15_6540' => 'ppa', 'Pp3c24_19730' => 'ppa', 'Pp3c24_19750' => 'ppa', 'Pp3c3_26540' => 'ppa', 'Pp3c7_200' => 'ppa', 'Pp3c9_17180' => 'ppa', 'PRCOL_00000632' => 'pco', 'PRCOL_00002658' => 'pco', 'PRCOL_00005061' => 'pco', 'PRCOL_00005279' => 'pco', 'Prupe.1G132500' => 'ppe', 'Prupe.1G309100' => 'ppe', 'Prupe.2G204600' => 'ppe', 'Prupe.3G045200' => 'ppe', 'Prupe.8G056000' => 'ppe', 'Psat0s2229g0080' => 'psa', 'Psat0ss6591g0080' => 'psa', 'Psat4g026280' => 'psa', 'Psat4g184720' => 'psa', 'Psat6g228960' => 'psa', 'PSO063G3445' => 'pso', 'PSO063G5435' => 'pso', 'PSO063G6257' => 'pso', 'PSO170G2583' => 'pso', 'PSO170G2855' => 'pso', 'PSO210G3438' => 'pso', 'PSO339G3040' => 'pso', 'PSO541G0733' => 'pso', 'PSO675G1921' => 'pso', 'PSO782G1180' => 'pso', 'PSO832G0660' => 'pso', 'PSO832G1872' => 'pso', 'QL01p043790' => 'qlo', 'QL02p034035' => 'qlo', 'QL04p040516' => 'qlo', 'QL05p009499' => 'qlo', 'QL06p010151' => 'qlo', 'RcHm_v2.0_Chr1g0361921' => 'rch', 'RcHm_v2.0_Chr2g0144451' => 'rch', 'RcHm_v2.0_Chr4g0423151' => 'rch', 'RcHm_v2.0_Chr4g0435441' => 'rch', 'RcHm_v2.0_Chr6g0272101' => 'rch', 'RcHm_v2.0_Chr6g0272111' => 'rch', 'Rhsim03G0110300' => 'rsi', 'Rhsim04G0224800' => 'rsi', 'Rhsim08G0088400' => 'rsi', 'Rhsim09G0109400' => 'rsi', 'Rhsim11G0060300' => 'rsi', 'RhsimUnG0069800' => 'rsi', 'Sabra03G0022400' => 'sbr', 'Sabra08G0018700' => 'sbr', 'Sabra10G0007300' => 'sbr', 'Sabra10G0096100' => 'sbr', 'Sabra13G0096700' => 'sbr', 'SalBow2G1825' => 'sbo', 'SalBow4G0837' => 'sbo', 'SalBow6G4581' => 'sbo', 'SalBow7G4062' => 'sbo', 'SalBow7G4603' => 'sbo', 'SalBow8G2532' => 'sbo', 'SalBow8G4456' => 'sbo', 'Sc10g0007840' => 'sci', 'Sc13g0003290' => 'sci', 'Sc14g0007530' => 'sci', 'Sc20g0001380' => 'sci', 'Sc23g0001140' => 'sci', 'Sed0000215' => 'sed', 'Sed0005451' => 'sed', 'Sed0006406' => 'sed', 'Sed0017832' => 'sed', 'Sed0018475' => 'sed', 'Sed0023484' => 'sed', 'SEGI_10371' => 'sgi', 'SEGI_22969' => 'sgi', 'SEGI_24551' => 'sgi', 'SEGI_27289' => 'sgi', 'SEGI_31717' => 'sgi', 'SEGI_36599' => 'sgi', 'SGA_v2.0_scaffold118G32467' => 'sas', 'SGA_v2.0_scaffold122G33357' => 'sas', 'SGA_v2.0_scaffold124G33542' => 'sas', 'SGA_v2.0_scaffold157G37375' => 'sas', 'SGA_v2.0_scaffold24G10550' => 'sas', 'SGA_v2.0_scaffold305G47948' => 'sas', 'SGA_v2.0_scaffold62G21356' => 'sas', 'SGA_v2.0_scaffold67G22605' => 'sas', 'SMO114G0149' => 'smo', 'SMO146G0273' => 'smo', 'SMO356G0665' => 'smo', 'SMO364G0033' => 'smo', 'SMO367G0768' => 'smo', 'Solyc01g066520.3' => 'sly', 'Solyc05g009530.3' => 'sly', 'Solyc07g006790.3' => 'sly', 'Solyc11g007720.2' => 'sly', 'Solyc11g017250.2' => 'sly', 'Sopen01g028100' => 'spe', 'Sopen05g005340' => 'spe', 'Sopen07g002890' => 'spe', 'Sopen11g003580' => 'spe', 'Sopen11g009150' => 'spe', 'Sp1g29620' => 'spa', 'Sp1g40660' => 'spa', 'Sp2g15100' => 'spa', 'Sp3g05810' => 'spa', 'Sp3g12170' => 'spa', 'Sp5g10070' => 'spa', 'TAR369G0417' => 'tar', 'TAR374G0785' => 'tar', 'TAR381G1246' => 'tar', 'TAR383G0108' => 'tar', 'TAR622G0319' => 'tar', 'TAR623G0595' => 'tar', 'TAR624G1008' => 'tar', 'TAR626G1502' => 'tar', 'THA.LOC104805952' => 'tha', 'THA.LOC104810360' => 'tha', 'THA.LOC104813373' => 'tha', 'THA.LOC104814057' => 'tha', 'THA.LOC104818913' => 'tha', 'THA.LOC104822644' => 'tha', 'THA.LOC104822773' => 'tha', 'THA.LOC104823502' => 'tha', 'THA.LOC104825703' => 'tha', 'THA.LOC109117050' => 'tha', 'Thecc.02G357000' => 'tca', 'Thecc.04G288000' => 'tca', 'Thecc.06G115500' => 'tca', 'Thecc.08G181400' => 'tca', 'Thecc.10G094600' => 'tca', 'Thhalv10004077m.g' => 'esa', 'Thhalv10007561m.g' => 'esa', 'Thhalv10010192m.g' => 'esa', 'Thhalv10011375m.g' => 'esa', 'Thhalv10020481m.g' => 'esa', 'Thhalv10020615m.g' => 'esa', 'TPR.G2508' => 'tpr', 'TPR.G26310' => 'tpr', 'TPR.G28499' => 'tpr', 'TPR.G3182' => 'tpr', 'TPR.G8818' => 'tpr', 'TWI09G1463' => 'twi', 'TWI34G0369' => 'twi', 'TWI60G1102' => 'twi', 'TWI63G0563' => 'twi', 'TWI73G1204' => 'twi', 'TWI75G1207' => 'twi', 'TWI75G1333' => 'twi', 'TWI79G0801' => 'twi', 'TWI79G1537' => 'twi', 'unitig_22.g5566' => 'ugi', 'unitig_32.g11569' => 'ugi', 'unitig_37.g12328' => 'ugi', 'unitig_747.g21469' => 'ugi', 'unitig_748.g8725' => 'ugi', 'vmacro00776' => 'vma', 'vmacro07212' => 'vma', 'vmacro08180' => 'vma', 'vmacro10550' => 'vma', 'vmacro19539' => 'vma', 'VMungo0331G1654' => 'vmu', 'VMungo0720G0340' => 'vmu', 'VMungo0720G2230' => 'vmu', 'VMungo0720G2664' => 'vmu', 'VMungo0720G3151' => 'vmu', 'VMungo1080G1278' => 'vmu', 'VMungo1215G0560' => 'vmu', 'VMungo1215G3043' => 'vmu', 'Zm00001eb041730' => 'zma', 'Zm00001eb061570' => 'zma', 'Zm00001eb130640' => 'zma', 'Zm00001eb138800' => 'zma', 'Zm00001eb179540' => 'zma', 'Zm00001eb205190' => 'zma', 'Zm00001eb240130' => 'zma', 'Zm00001eb312300' => 'zma', 'Zm00001eb408460' => 'zma' ) $gf_id = 'HOM05D000797' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000797' ) $data_identifier = 'HOM05D000797' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 12, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408460' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1